Detailed information of SNP:
|
SNP ID:
sf0223172146(Gbrowse)
Chromosome: chr02 Position: 23172146 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 53.74% | 46.26% |
| All Indica | 797 | 83.06% | 16.94% |
| All Japonica | 496 | 4.84% | 95.16% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 67.61% | 32.39% |
| Indica Intermediate | 209 | 75.60% | 24.40% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223172146 | G->T | LOC_Os02g38340(LOC_Os02g38340.1) | INTRON |