Detailed information of SNP:
|
SNP ID:
sf0223180226(Gbrowse)
Chromosome: chr02 Position: 23180226 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 97.67% | 2.33% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 497 | 93.96% | 6.04% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 91.34% | 8.66% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223180226 | C->G | LOC_Os02g38350(LOC_Os02g38350.2) | INTRON |
| sf0223180226 | C->G | LOC_Os02g38350(LOC_Os02g38350.1) | INTRON |
| sf0223180226 | C->G | LOC_Os02g38350(LOC_Os02g38350.3) | INTRON |