Detailed information of SNP:
|
SNP ID:
sf0223184985(Gbrowse)
Chromosome: chr02 Position: 23184985 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 61.14% | 38.86% |
| All Indica | 798 | 52.13% | 47.87% |
| All Japonica | 497 | 86.32% | 13.68% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 61.60% | 38.40% |
| Indica II | 213 | 44.13% | 55.87% |
| Indica Intermediate | 210 | 43.33% | 56.67% |
| Temperate Japonica | 335 | 95.22% | 4.78% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223184985 | A->G | INTERGENIC | None |