Detailed information of SNP:
|
SNP ID:
sf0223190220(Gbrowse)
Chromosome: chr02 Position: 23190220 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 96.73% | 3.27% |
| All Indica | 791 | 96.59% | 3.41% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 63 | 90.48% | 9.52% |
| Indica I | 368 | 95.65% | 4.35% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223190220 | A->G | INTERGENIC | None |