Detailed information of SNP:
|
SNP ID:
sf0223240221(Gbrowse)
Chromosome: chr02 Position: 23240221 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 94.33% | 5.67% |
| All Indica | 796 | 96.36% | 3.64% |
| All Japonica | 493 | 90.26% | 9.74% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 334 | 94.31% | 5.69% |
| Tropical Japonica | 91 | 78.02% | 21.98% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223240221 | C->T | INTERGENIC | None |