Detailed information of SNP:
|
SNP ID:
sf0223258022(Gbrowse)
Chromosome: chr02 Position: 23258022 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1371 | 99.20% | 0.80% |
| All Indica | 790 | 100.00% | 0.00% |
| All Japonica | 460 | 97.61% | 2.39% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 210 | 100.00% | 0.00% |
| Indica Intermediate | 206 | 100.00% | 0.00% |
| Temperate Japonica | 315 | 100.00% | 0.00% |
| Tropical Japonica | 81 | 86.42% | 13.58% |
| Japonica Intermediate | 64 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223258022 | G->A | INTERGENIC | None |