Detailed information of SNP:
|
SNP ID:
sf0223263304(Gbrowse)
Chromosome: chr02 Position: 23263304 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 87.31% | 12.69% |
| All Indica | 798 | 81.70% | 18.30% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 374 | 72.99% | 27.01% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223263304 | A->G | LOC_Os02g38480(LOC_Os02g38480.1) | Synonymous |