Detailed information of SNP:
|
SNP ID:
sf0223266446(Gbrowse)
Chromosome: chr02 Position: 23266446 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 61.02% | 38.98% |
| All Indica | 797 | 87.95% | 12.05% |
| All Japonica | 496 | 11.90% | 88.10% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 94.39% | 5.61% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 210 | 71.43% | 28.57% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 93 | 20.43% | 79.57% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223266446 | C->G | INTERGENIC | None |