Detailed information of SNP:
|
SNP ID:
sf0223267403(Gbrowse)
Chromosome: chr02 Position: 23267403 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 89.48% | 10.52% |
| All Indica | 790 | 82.66% | 17.34% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 87.69% | 12.31% |
| Indica I | 367 | 74.11% | 25.89% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 85.24% | 14.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223267403 | G->A | LOC_Os02g38490(LOC_Os02g38490.3) | UTR_3_PRIME |
| sf0223267403 | G->A | LOC_Os02g38490(LOC_Os02g38490.4) | INTRON |
| sf0223267403 | G->A | LOC_Os02g38490(LOC_Os02g38490.2) | UTR_3_PRIME |
| sf0223267403 | G->A | LOC_Os02g38490(LOC_Os02g38490.1) | UTR_3_PRIME |