Detailed information of SNP:
|
SNP ID:
sf0223270029(Gbrowse)
Chromosome: chr02 Position: 23270029 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 74.68% | 25.32% |
| All Indica | 791 | 91.28% | 8.72% |
| All Japonica | 489 | 46.01% | 53.99% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 373 | 89.81% | 10.19% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 205 | 90.24% | 9.76% |
| Temperate Japonica | 333 | 30.03% | 69.97% |
| Tropical Japonica | 90 | 88.89% | 11.11% |
| Japonica Intermediate | 66 | 68.18% | 31.82% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223270029 | A->G | INTERGENIC | None |