Detailed information of SNP:
|
SNP ID:
sf0223270198(Gbrowse)
Chromosome: chr02 Position: 23270198 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1377 | 73.71% | 26.29% |
| All Indica | 774 | 87.60% | 12.40% |
| All Japonica | 482 | 46.89% | 53.11% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 365 | 91.51% | 8.49% |
| Indica II | 204 | 90.20% | 9.80% |
| Indica Intermediate | 205 | 78.05% | 21.95% |
| Temperate Japonica | 327 | 28.75% | 71.25% |
| Tropical Japonica | 89 | 96.63% | 3.37% |
| Japonica Intermediate | 66 | 69.70% | 30.30% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223270198 | C->G | INTERGENIC | None |