Detailed information of SNP:
|
SNP ID:
sf0223348528(Gbrowse)
Chromosome: chr02 Position: 23348528 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1383 | 96.53% | 3.47% |
| All Indica | 782 | 95.14% | 4.86% |
| All Japonica | 479 | 98.33% | 1.67% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 370 | 99.73% | 0.27% |
| Indica II | 204 | 88.24% | 11.76% |
| Indica Intermediate | 208 | 93.75% | 6.25% |
| Temperate Japonica | 330 | 99.39% | 0.61% |
| Tropical Japonica | 82 | 96.34% | 3.66% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223348528 | T->C | INTERGENIC | None |