Detailed information of SNP:
|
SNP ID:
sf0223388674(Gbrowse)
Chromosome: chr02 Position: 23388674 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 95.12% | 4.88% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 493 | 88.84% | 11.16% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 97.60% | 2.40% |
| Tropical Japonica | 91 | 52.75% | 47.25% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223388674 | G->A | LOC_Os02g38700(LOC_Os02g38700.1) | Synonymous |