Detailed information of SNP:
|
SNP ID:
sf0223399754(Gbrowse)
Chromosome: chr02 Position: 23399754 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 94.48% | 5.52% |
| All Indica | 796 | 94.85% | 5.15% |
| All Japonica | 493 | 92.49% | 7.51% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 97.59% | 2.41% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 332 | 93.67% | 6.33% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223399754 | G->A | LOC_Os02g38720(LOC_Os02g38720.1) | Non-Synonymous SNP |