Detailed information of SNP:
|
SNP ID:
sf0223416352(Gbrowse)
Chromosome: chr02 Position: 23416352 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 57.46% | 42.54% |
| All Indica | 792 | 33.84% | 66.16% |
| All Japonica | 490 | 89.18% | 10.82% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 373 | 27.35% | 72.65% |
| Indica II | 209 | 39.71% | 60.29% |
| Indica Intermediate | 210 | 39.52% | 60.48% |
| Temperate Japonica | 333 | 89.49% | 10.51% |
| Tropical Japonica | 92 | 86.96% | 13.04% |
| Japonica Intermediate | 65 | 90.77% | 9.23% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223416352 | T->C | LOC_Os02g38760(LOC_Os02g38760.1) | INTRON |