Detailed information of SNP:
|
SNP ID:
sf0223416735(Gbrowse)
Chromosome: chr02 Position: 23416735 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1378 | 63.50% | 36.50% |
| All Indica | 783 | 91.32% | 8.68% |
| All Japonica | 475 | 17.47% | 82.53% |
| Aus | 65 | 67.69% | 32.31% |
| Indica I | 370 | 90.54% | 9.46% |
| Indica II | 207 | 95.17% | 4.83% |
| Indica Intermediate | 206 | 88.83% | 11.17% |
| Temperate Japonica | 321 | 14.64% | 85.36% |
| Tropical Japonica | 88 | 27.27% | 72.73% |
| Japonica Intermediate | 66 | 18.18% | 81.82% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223416735 | C->T | LOC_Os02g38760(LOC_Os02g38760.1) | INTRON |