Detailed information of SNP:
|
SNP ID:
sf0223416746(Gbrowse)
Chromosome: chr02 Position: 23416746 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1391 | 67.72% | 32.28% |
| All Indica | 789 | 93.92% | 6.08% |
| All Japonica | 482 | 24.48% | 75.52% |
| Aus | 65 | 72.31% | 27.69% |
| Indica I | 369 | 93.22% | 6.78% |
| Indica II | 211 | 96.68% | 3.32% |
| Indica Intermediate | 209 | 92.34% | 7.66% |
| Temperate Japonica | 324 | 21.30% | 78.70% |
| Tropical Japonica | 91 | 37.36% | 62.64% |
| Japonica Intermediate | 67 | 22.39% | 77.61% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223416746 | C->T | LOC_Os02g38760(LOC_Os02g38760.1) | INTRON |