Detailed information of SNP:
|
SNP ID:
sf0223419298(Gbrowse)
Chromosome: chr02 Position: 23419298 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 67.69% | 32.31% |
| All Indica | 794 | 93.58% | 6.42% |
| All Japonica | 491 | 25.46% | 74.54% |
| Aus | 66 | 68.18% | 31.82% |
| Indica I | 374 | 91.71% | 8.29% |
| Indica II | 211 | 96.68% | 3.32% |
| Indica Intermediate | 209 | 93.78% | 6.22% |
| Temperate Japonica | 331 | 22.66% | 77.34% |
| Tropical Japonica | 93 | 37.63% | 62.37% |
| Japonica Intermediate | 67 | 22.39% | 77.61% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223419298 | C->T | INTERGENIC | None |