Detailed information of SNP:
|
SNP ID:
sf0223419780(Gbrowse)
Chromosome: chr02 Position: 23419780 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 75.80% | 24.20% |
| All Indica | 794 | 97.10% | 2.90% |
| All Japonica | 494 | 39.27% | 60.73% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 372 | 96.51% | 3.49% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 95.69% | 4.31% |
| Temperate Japonica | 335 | 27.16% | 72.84% |
| Tropical Japonica | 92 | 90.22% | 9.78% |
| Japonica Intermediate | 67 | 29.85% | 70.15% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223419780 | G->A | INTERGENIC | None |