Detailed information of SNP:
|
SNP ID:
sf0223421208(Gbrowse)
Chromosome: chr02 Position: 23421208 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 71.88% | 28.12% |
| All Indica | 792 | 96.84% | 3.16% |
| All Japonica | 496 | 28.83% | 71.17% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 373 | 96.51% | 3.49% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 206 | 95.63% | 4.37% |
| Temperate Japonica | 335 | 25.97% | 74.03% |
| Tropical Japonica | 93 | 39.78% | 60.22% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223421208 | G->C | LOC_Os02g38770(LOC_Os02g38770.1) | Non-Synonymous SNP |