Detailed information of SNP:
|
SNP ID:
sf0223426899(Gbrowse)
Chromosome: chr02 Position: 23426899 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 93.97% | 6.03% |
| All Indica | 789 | 97.21% | 2.79% |
| All Japonica | 484 | 89.05% | 10.95% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 371 | 97.57% | 2.43% |
| Indica II | 211 | 96.68% | 3.32% |
| Indica Intermediate | 207 | 97.10% | 2.90% |
| Temperate Japonica | 326 | 88.04% | 11.96% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 64 | 89.06% | 10.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223426899 | C->T | LOC_Os02g38780(LOC_Os02g38780.3) | INTRON |
| sf0223426899 | C->T | LOC_Os02g38780(LOC_Os02g38780.2) | INTRON |
| sf0223426899 | C->T | LOC_Os02g38780(LOC_Os02g38780.1) | INTRON |