Detailed information of SNP:
|
SNP ID:
sf0223427300(Gbrowse)
Chromosome: chr02 Position: 23427300 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 71.22% | 28.78% |
| All Indica | 792 | 96.09% | 3.91% |
| All Japonica | 496 | 28.43% | 71.57% |
| Aus | 64 | 92.19% | 7.81% |
| Indica I | 372 | 96.24% | 3.76% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 209 | 95.69% | 4.31% |
| Temperate Japonica | 334 | 26.65% | 73.35% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223427300 | G->A | LOC_Os02g38780(LOC_Os02g38780.3) | INTRON |
| sf0223427300 | G->A | LOC_Os02g38780(LOC_Os02g38780.2) | INTRON |
| sf0223427300 | G->A | LOC_Os02g38780(LOC_Os02g38780.1) | INTRON |