Detailed information of SNP:
|
SNP ID:
sf0223440654(Gbrowse)
Chromosome: chr02 Position: 23440654 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 66.26% | 33.74% |
| All Indica | 788 | 95.43% | 4.57% |
| All Japonica | 486 | 14.20% | 85.80% |
| Aus | 63 | 93.65% | 6.35% |
| Indica I | 371 | 97.04% | 2.96% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 205 | 92.20% | 7.80% |
| Temperate Japonica | 329 | 5.78% | 94.22% |
| Tropical Japonica | 90 | 27.78% | 72.22% |
| Japonica Intermediate | 67 | 37.31% | 62.69% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223440654 | T->C | LOC_Os02g38790(LOC_Os02g38790.1) | INTRON |