Detailed information of SNP:
|
SNP ID:
sf0223448058(Gbrowse)
Chromosome: chr02 Position: 23448058 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 50.74% | 49.26% |
| All Indica | 798 | 74.31% | 25.69% |
| All Japonica | 497 | 10.66% | 89.34% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 82.67% | 17.33% |
| Indica II | 212 | 69.81% | 30.19% |
| Indica Intermediate | 211 | 63.98% | 36.02% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223448058 | C->T | LOC_Os02g38800(LOC_Os02g38800.1) | INTRON |