Detailed information of SNP:
|
SNP ID:
sf0223481473(Gbrowse)
Chromosome: chr02 Position: 23481473 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 78.29% | 21.71% |
| All Indica | 799 | 68.71% | 31.29% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 79.73% | 20.27% |
| Indica II | 213 | 46.95% | 53.05% |
| Indica Intermediate | 211 | 71.09% | 28.91% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223481473 | G->A | INTERGENIC | None |