Detailed information of SNP:
|
SNP ID:
sf0223483129(Gbrowse)
Chromosome: chr02 Position: 23483129 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 82.99% | 17.01% |
| All Indica | 797 | 76.79% | 23.21% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 374 | 90.37% | 9.63% |
| Indica II | 212 | 50.00% | 50.00% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223483129 | G->A | INTERGENIC | None |