Detailed information of SNP:
|
SNP ID:
sf0223500635(Gbrowse)
Chromosome: chr02 Position: 23500635 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1349 | 82.73% | 17.27% |
| All Indica | 758 | 72.30% | 27.70% |
| All Japonica | 495 | 97.58% | 2.42% |
| Aus | 49 | 97.96% | 2.04% |
| Indica I | 375 | 79.47% | 20.53% |
| Indica II | 179 | 59.78% | 40.22% |
| Indica Intermediate | 204 | 70.10% | 29.90% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 5 | 80.00% | 20.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223500635 | G->A | INTERGENIC | None |