Detailed information of SNP:
|
SNP ID:
sf0223501955(Gbrowse)
Chromosome: chr02 Position: 23501955 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 79.00% | 21.00% |
| All Indica | 799 | 69.21% | 30.79% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 79.47% | 20.53% |
| Indica II | 213 | 49.30% | 50.70% |
| Indica Intermediate | 211 | 71.09% | 28.91% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223501955 | C->T | INTERGENIC | None |