Detailed information of SNP:
|
SNP ID:
sf0223502114(Gbrowse)
Chromosome: chr02 Position: 23502114 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 78.37% | 21.63% |
| All Indica | 799 | 68.71% | 31.29% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 79.20% | 20.80% |
| Indica II | 213 | 48.36% | 51.64% |
| Indica Intermediate | 211 | 70.62% | 29.38% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223502114 | A->C | INTERGENIC | None |