Detailed information of SNP:
|
SNP ID:
sf0223502639(Gbrowse)
Chromosome: chr02 Position: 23502639 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 78.49% | 21.51% |
| All Indica | 799 | 68.71% | 31.29% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 79.20% | 20.80% |
| Indica II | 213 | 48.36% | 51.64% |
| Indica Intermediate | 211 | 70.62% | 29.38% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223502639 | G->A | LOC_Os02g38880(LOC_Os02g38880.1) | Synonymous |