Detailed information of SNP:
|
SNP ID:
sf0223512659(Gbrowse)
Chromosome: chr02 Position: 23512659 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 61.28% | 38.72% |
| All Indica | 799 | 76.35% | 23.65% |
| All Japonica | 497 | 38.23% | 61.77% |
| Aus | 66 | 63.64% | 36.36% |
| Indica I | 375 | 89.87% | 10.13% |
| Indica II | 213 | 50.70% | 49.30% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 31.64% | 68.36% |
| Tropical Japonica | 94 | 42.55% | 57.45% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223512659 | T->C | INTERGENIC | None |