Detailed information of SNP:
|
SNP ID:
sf0223512822(Gbrowse)
Chromosome: chr02 Position: 23512822 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 77.40% | 22.60% |
| All Indica | 798 | 98.87% | 1.13% |
| All Japonica | 496 | 40.12% | 59.88% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 32.24% | 67.76% |
| Tropical Japonica | 94 | 50.00% | 50.00% |
| Japonica Intermediate | 67 | 65.67% | 34.33% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223512822 | T->C | INTERGENIC | None |