Detailed information of SNP:
|
SNP ID:
sf0223517079(Gbrowse)
Chromosome: chr02 Position: 23517079 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 74.19% | 25.81% |
| All Indica | 799 | 80.48% | 19.52% |
| All Japonica | 497 | 61.57% | 38.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 88.53% | 11.47% |
| Indica II | 213 | 73.24% | 26.76% |
| Indica Intermediate | 211 | 73.46% | 26.54% |
| Temperate Japonica | 335 | 68.66% | 31.34% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223517079 | G->A | INTERGENIC | None |