Detailed information of SNP:
|
SNP ID:
sf0223519208(Gbrowse)
Chromosome: chr02 Position: 23519208 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 92.94% | 7.06% |
| All Indica | 798 | 92.61% | 7.39% |
| All Japonica | 495 | 92.12% | 7.88% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 89.33% | 10.67% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 333 | 97.30% | 2.70% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223519208 | G->A | INTERGENIC | None |