Detailed information of SNP:
|
SNP ID:
sf0223531579(Gbrowse)
Chromosome: chr02 Position: 23531579 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 61.16% | 38.84% |
| All Indica | 797 | 63.36% | 36.64% |
| All Japonica | 497 | 58.95% | 41.05% |
| Aus | 66 | 68.18% | 31.82% |
| Indica I | 375 | 78.13% | 21.87% |
| Indica II | 213 | 45.54% | 54.46% |
| Indica Intermediate | 209 | 55.02% | 44.98% |
| Temperate Japonica | 335 | 65.97% | 34.03% |
| Tropical Japonica | 94 | 53.19% | 46.81% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223531579 | G->A | INTERGENIC | None |