Detailed information of SNP:



SNP ID: sf0223531579(Gbrowse)

Chromosome: chr02

Position: 23531579
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1416 61.16% 38.84%
All Indica797 63.36% 36.64%
All Japonica497 58.95% 41.05%
Aus66 68.18% 31.82%
Indica I375 78.13% 21.87%
Indica II213 45.54% 54.46%
Indica Intermediate209 55.02% 44.98%
Temperate Japonica335 65.97% 34.03%
Tropical Japonica94 53.19% 46.81%
Japonica Intermediate68 32.35% 67.65%
Group VI/Aromatic14 21.43% 78.57%
Intermediate42 47.62% 52.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0223531579 G->A INTERGENIC None