Detailed information of SNP:
|
SNP ID:
sf0223552707(Gbrowse)
Chromosome: chr02 Position: 23552707 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 77.88% | 22.12% |
| All Indica | 795 | 73.21% | 26.79% |
| All Japonica | 497 | 87.93% | 12.07% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 374 | 87.70% | 12.30% |
| Indica II | 212 | 58.49% | 41.51% |
| Indica Intermediate | 209 | 62.20% | 37.80% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223552707 | T->A | INTERGENIC | None |