Detailed information of SNP:
|
SNP ID:
sf0223553638(Gbrowse)
Chromosome: chr02 Position: 23553638 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 77.10% | 22.90% |
| All Indica | 799 | 91.11% | 8.89% |
| All Japonica | 497 | 52.92% | 47.08% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 68.06% | 31.94% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223553638 | G->A | INTERGENIC | None |