Detailed information of SNP:
|
SNP ID:
sf0223555840(Gbrowse)
Chromosome: chr02 Position: 23555840 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1382 | 62.23% | 37.77% |
| All Indica | 796 | 90.95% | 9.05% |
| All Japonica | 463 | 6.48% | 93.52% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 210 | 76.67% | 23.33% |
| Temperate Japonica | 334 | 1.50% | 98.50% |
| Tropical Japonica | 62 | 37.10% | 62.90% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223555840 | A->G | INTERGENIC | None |