Detailed information of SNP:
|
SNP ID:
sf0223568443(Gbrowse)
Chromosome: chr02 Position: 23568443 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 66.78% | 33.22% |
| All Indica | 796 | 47.11% | 52.89% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 373 | 47.18% | 52.82% |
| Indica II | 212 | 42.92% | 57.08% |
| Indica Intermediate | 211 | 51.18% | 48.82% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223568443 | C->G | LOC_Os02g39030(LOC_Os02g39030.1) | Non-Synonymous SNP |
| sf0223568443 | C->G | LOC_Os02g39030(LOC_Os02g39030.2) | Non-Synonymous SNP |