Detailed information of SNP:
|
SNP ID:
sf0223577432(Gbrowse)
Chromosome: chr02 Position: 23577432 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 89.16% | 10.84% |
| All Indica | 798 | 94.61% | 5.39% |
| All Japonica | 490 | 78.78% | 21.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 81.90% | 18.10% |
| Temperate Japonica | 330 | 85.15% | 14.85% |
| Tropical Japonica | 92 | 79.35% | 20.65% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223577432 | G->T | LOC_Os02g39060(LOC_Os02g39060.1) | INTRON |