Detailed information of SNP:
|
SNP ID:
sf0223579915(Gbrowse)
Chromosome: chr02 Position: 23579915 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 66.22% | 33.78% |
| All Indica | 798 | 46.37% | 53.63% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 374 | 46.79% | 53.21% |
| Indica II | 213 | 42.25% | 57.75% |
| Indica Intermediate | 211 | 49.76% | 50.24% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223579915 | T->C | LOC_Os02g39064(LOC_Os02g39064.1) | INTRON |