Detailed information of SNP:
|
SNP ID:
sf0223592506(Gbrowse)
Chromosome: chr02 Position: 23592506 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 65.09% | 34.91% |
| All Indica | 798 | 50.38% | 49.62% |
| All Japonica | 497 | 88.33% | 11.67% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 49.60% | 50.40% |
| Indica II | 213 | 43.19% | 56.81% |
| Indica Intermediate | 210 | 59.05% | 40.95% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 50.00% | 50.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223592506 | A->G | LOC_Os02g39070(LOC_Os02g39070.1) | INTRON |
| sf0223592506 | A->G | LOC_Os02g39070(LOC_Os02g39070.2) | INTRON |