Detailed information of SNP:
|
SNP ID:
sf0223605192(Gbrowse)
Chromosome: chr02 Position: 23605192 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 50.53% | 49.47% |
| All Indica | 799 | 79.22% | 20.78% |
| All Japonica | 497 | 3.22% | 96.78% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 211 | 63.98% | 36.02% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223605192 | T->A | INTERGENIC | None |