Detailed information of SNP:
|
SNP ID:
sf0223605323(Gbrowse)
Chromosome: chr02 Position: 23605323 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 50.35% | 49.65% |
| All Indica | 798 | 79.07% | 20.93% |
| All Japonica | 497 | 3.02% | 96.98% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 374 | 93.58% | 6.42% |
| Indica II | 213 | 68.54% | 31.46% |
| Indica Intermediate | 211 | 63.98% | 36.02% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223605323 | A->G | INTERGENIC | None |