Detailed information of SNP:
|
SNP ID:
sf0223609946(Gbrowse)
Chromosome: chr02 Position: 23609946 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 80.11% | 19.89% |
| All Indica | 798 | 89.10% | 10.90% |
| All Japonica | 497 | 62.98% | 37.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 71.43% | 28.57% |
| Temperate Japonica | 335 | 74.33% | 25.67% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223609946 | G->A | INTERGENIC | None |