Detailed information of SNP:
|
SNP ID:
sf0223623431(Gbrowse)
Chromosome: chr02 Position: 23623431 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1356 | 60.03% | 39.97% |
| All Indica | 773 | 87.45% | 12.55% |
| All Japonica | 463 | 7.78% | 92.22% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 369 | 88.89% | 11.11% |
| Indica II | 211 | 92.89% | 7.11% |
| Indica Intermediate | 193 | 78.76% | 21.24% |
| Temperate Japonica | 332 | 1.51% | 98.49% |
| Tropical Japonica | 65 | 35.38% | 64.62% |
| Japonica Intermediate | 66 | 12.12% | 87.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223623431 | A->G | INTERGENIC | None |