Detailed information of SNP:
|
SNP ID:
sf0223624917(Gbrowse)
Chromosome: chr02 Position: 23624917 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 58.01% | 41.99% |
| All Indica | 797 | 87.70% | 12.30% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 210 | 68.10% | 31.90% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223624917 | G->A | INTERGENIC | None |