Detailed information of SNP:
|
SNP ID:
sf0223625708(Gbrowse)
Chromosome: chr02 Position: 23625708 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 79.66% | 20.34% |
| All Indica | 799 | 88.61% | 11.39% |
| All Japonica | 494 | 62.15% | 37.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 69.67% | 30.33% |
| Temperate Japonica | 332 | 73.19% | 26.81% |
| Tropical Japonica | 94 | 46.81% | 53.19% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223625708 | T->C | INTERGENIC | None |