Detailed information of SNP:
|
SNP ID:
sf0223628297(Gbrowse)
Chromosome: chr02 Position: 23628297 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 59.36% | 40.64% |
| All Indica | 795 | 86.04% | 13.96% |
| All Japonica | 497 | 10.26% | 89.74% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 90.37% | 9.63% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 208 | 68.27% | 31.73% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223628297 | T->C | INTERGENIC | None |