Detailed information of SNP:
|
SNP ID:
sf0223631314(Gbrowse)
Chromosome: chr02 Position: 23631314 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 50.50% | 49.50% |
| All Indica | 795 | 75.22% | 24.78% |
| All Japonica | 496 | 9.07% | 90.93% |
| Aus | 65 | 69.23% | 30.77% |
| Indica I | 373 | 93.83% | 6.17% |
| Indica II | 212 | 56.60% | 43.40% |
| Indica Intermediate | 210 | 60.95% | 39.05% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 93 | 41.94% | 58.06% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223631314 | G->A | INTERGENIC | None |